Abstract: The managing targets of the marine ecological restoration are determined according to the features and working procedures of the restoration projects and the indicator system for performance evaluation is constructed with the method of the logic framework based on resultsoriented ecological restoration. The indicator system consists of managing indicators and outcome indicators, which correspond to the input, output, target and outcome in the logic framework. The managing indicators include performance condition of the project, condition of tracking and monitoring, condition of fund use and condition of project management, while the outcome indicators include marine hydrodynamics, marine geomorphology and deposition-erosion, marine water quality, ecological condition of marine life, ecological landscape, environment sensitive area of marine ecosystem and comprehensive profit of the project. The establishment of the indicator system for performance evaluation can provide a technological support for the scientific judgement of project performance and the improvement of project management performance for the development of project performance efficiency, which has positive scientific meaning and practical value for the adaptable managing needs of marine ecological protection and restoration.